KISTI-PAL USER GUIDE

Contents:

• Introduction
• System Information
  • User Interface (UI) Nodes
  • Cluster (HTCondor worker node, MPI Enabled)
  • Installed Packages
• Access PAL UI server
  • Prerequisites
  • KISTI Account Creation
  • KISTI PAL UI Nodes
  • User Interface (UI) Access with SSH
• Setting Environment Variables
• Helpdesk Service
• GUI Applications
• Data Transfer
  • SFTP (Secure File Transfer Protocol, SecureFTP)
  • Globus Online
• HTCondor & CrystFEL
  • CrystFEL
  • HTcondor
  • Indexamajig/Partialator based on the HTCondor
• HTCondor & CrystFEL Tutorial
  • 1. Data analysis preparation
  • 2. CXI File Lists Creation
    • 2.1 Preparing files for analysis
    • 2.2 Generating CXI file list
  • 3 Submit indexamajig condor jobs
    • 3.1 HTcondor job submit overview
    • 3.2 Output Setting
    • 3.3 Indexmajig Job(HTCondor) Submition
  • 4 HTCondor job managing
    • 4.1. Checking the Condor Queue after Running script job
    • 4.2. HTCondor Resource Status
    • 4.3. Execution Results
    • 4.4. Job History
  • 5 Submit Partialator condor jobs
    • 5.1 Script Description
    • 5.2 Directory Structure
    • 5.3 Prerequisites
    • 5.4 Usage
    • 5.5 Understanding Variables in the Scripts
• HTCondor References
  • Condor_manual
  • Condor Commands
  • Checking Condor Job Queue
  • Analyzing Jobs in HTCondor
  • Removing Submitted Condor Jobs
  • Condor Job Prioritization

Note

KISTI GSDC PAL Farm User Guide

Version 1.0 3 June 2024 Written by S. Ahn and S. Na Contact: shna@kisti.re.kr